10X Visium - Human Normal Prostate

Gene expression library of Human Normal Prostate (Visium FFPE) using the Human Whole Transcriptome Probe Set

tenx_visium

Info

tenx_visium/visium/human_normal_prostate
10x Genomics (2021)
37.44 MiB
23-09-2024
2543 cells × 13046 genes

Used in

Description

10x Genomics obtained FFPE human prostate tissue from Indivumed Human Tissue Specimens. The tissue was sectioned as described in Visium Spatial Gene Expression for FFPE – Tissue Preparation Guide Demonstrated Protocol (CG000408). Tissue sections of 5 µm were placed on Visium Gene Expression slides, then stained following Deparaffinization, H&E Staining, Imaging & Decrosslinking Demonstrated Protocol (CG000409).

Preview

dataset is an AnnData object with n_obs × n_vars = 2543 × 13046 with slots:

Reference

Name Description Type Data type Size
var
feature_id Unique identifier for the feature, usually a ENSEMBL gene id. vector object 13046
feature_name A human-readable name for the feature, usually a gene symbol. vector object 13046
layers
counts Raw counts sparsematrix float32 2543 × 13046
uns
dataset_description Long description of the dataset. atomic str 1
dataset_id A unique identifier for the dataset. This is different from the obs.dataset_id field, which is the identifier for the dataset from which the cell data is derived. atomic str 1
dataset_name A human-readable name for the dataset. atomic str 1
dataset_organism The organism of the sample in the dataset. atomic str 1
dataset_reference Bibtex reference of the paper in which the dataset was published. atomic str 1
dataset_summary Short description of the dataset. atomic str 1
dataset_url Link to the original source of the dataset. atomic str 1

References

10x Genomics. 2021. “Normal Human Prostate (FFPE).” https://www.10xgenomics.com/datasets/normal-human-prostate-ffpe-1-standard-1-3-0.